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AgeCommit message (Expand)Author
4 daysInclude sample id and study id in the JSON outputLan Hui
4 daysRemove unused codeLan Hui
4 daysOutput some stats, beginning with %%Lan Hui
4 daysFix key errorsLan Hui
4 daysRetrieve more tissue information from ena_study.xmlLan Hui
4 daysRetrieve more tissue information from read_experimentLan Hui
5 daysRetrieve more tissue informationLan Hui
6 daysFuther improve XML processing logicHui Lan
7 daysParse ENA records XML files. It seems that XML structure for experiment, stu...Hui Lan
7 daysFix typo 'expriment' in 'read_expriment'Hui Lan
8 daysShow script name in the log line.Hui Lan
8 daysSave ENA records to XML files under Data/temp/Hui Lan
11 daysRun this file from time to time to get the most recent RNA-Seq records at ENAHui Lan
11 daysMaintenanceHui Lan
14 daysShow number of remaining RNA-Seq data to reflect remaining workHui Lan
14 daysRemove the line in configure.py that caused downloading not work for 4 daysHui Lan
2025-04-02Reverse download log lines and write them to a new file download_log_reversed...Hui Lan
2025-03-09Remove the experimental file killprocess.pyHui Lan
2025-03-09Kill wget if it takes too longHui Lan
2025-03-09Append DONE to the download log in case the downloading process cannot move o...Hui Lan
2025-03-09Sync changes made on my Ubuntu desktop machine i7-13700HHui Lan
2025-03-09configure.pyHui Lan
2024-08-28Pretty print JSONLan Hui
2024-08-26JSON file should look like '{key:value}' but not ['{key:value}']Lan Hui
2024-08-26Use R package jsonlite instead of rjson, to support the 'digits' option, whic...Lan Hui
2024-08-17[mergeTPM.py] correct grammar errorLan Hui
2024-08-17merge all TPM files and put the merged file in folder assembleLan Hui
2024-08-16Count all downloaded RUNsLan Hui
2024-08-11Required Python modulesLan Hui
2024-08-11Remove temporary fileLan Hui
2024-08-11dos2unixLan Hui
2024-08-10[create_edges0B.py] Correct Python script nameHui Lan
2024-08-10[create_edges0.py] Store edges in folder ../Data/history/edges/many_targetsHui Lan
2024-08-10[update_network.py] Do not generation json files for gene expression if not d...Hui Lan
2024-08-09[update_network.py] Simplify codeHui Lan
2024-08-08Improve memory efficency while building TPM.txtHui Lan
2024-08-07Use TPM_FILE instead of TPM_TABLEHui Lan
2024-08-07Fix error occurred while running update_network.pyHui Lan
2024-08-07[update_network.py] Rename FILE_TIMESTAMP to TIMESTAMP_FILEHui Lan
2024-08-07Review update_network.pyHui Lan
2024-08-07Put the definition of make_paths() in utils.py because multiple places use itHui Lan
2024-08-07Important files and directoriesHui Lan
2024-08-06update_network.py: delete the 'merge edge' stuff because this is the job of u...Hui Lan
2024-08-06merge_edges.py: add some commentsHui Lan
2024-08-05update_network_by_force.py: improve code speedHui Lan
2024-08-05update_network_by_force.py: fix runtime errorHui Lan
2024-08-05update_network_by_force.py: review and make updatesHui Lan
2024-08-05Remove testlog.txt because it is no longer neededHui Lan
2024-08-05Update write_log_file() so that it put the most recent message on the top; re...Hui Lan
2024-08-04Do not record duplicate edges (to save space). May take longer to run.Hui Lan
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