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| author | Lan Hui <lanhui@zjnu.edu.cn> | 2025-04-16 15:49:24 +0800 |
|---|---|---|
| committer | Lan Hui <lanhui@zjnu.edu.cn> | 2025-04-16 15:49:24 +0800 |
| commit | d2ed59d6910a82195b3883ac2b074688f8841489 (patch) | |
| tree | e8e5d2ae6f48fec90275bd6d4bd47ccd5ba3b5ec /Code | |
| parent | 0a09eb64a364a1bf67e06c77cce34672beecaec1 (diff) | |
Remove unused code
Diffstat (limited to 'Code')
| -rw-r--r-- | Code/parse_ena_xml.py | 47 |
1 files changed, 0 insertions, 47 deletions
diff --git a/Code/parse_ena_xml.py b/Code/parse_ena_xml.py index 8d45481..c22ec2a 100644 --- a/Code/parse_ena_xml.py +++ b/Code/parse_ena_xml.py @@ -336,50 +336,3 @@ if __name__ == '__main__': fname = '../Data/information/rnaseq_info_database.json.temp' with open(fname, 'w') as f: json.dump(json_dict, f, indent=4) - - - sys.exit() - # Collect information for each run ID - for k in sorted(d_run_keys): - lst = [] - lst.append(k) - if k in d_run: - if k in d_sample: - if d_sample[k]['external_id'] != '.': - lst.append(d_sample[k]['external_id'] + '...' + d_sample[k]['tissue']) - else: - lst.append(d_sample[k]['primary_id'] + '...' + d_sample[k]['tissue']) - else: - lst.append('.') - - lst.append( d_run[k]['experiment_id'] ) - lst.append( d_run[k]['study_id'] ) - - # for column study_id_PRJ - if k in d_study: - lst.append( d_study[k]['primary_id'] ) - else: - lst.append( '.' ) - lst.append( d_run[k]['title'] ) - lst.append( d_run[k]['alias'] ) - - s = '' # description string - - if k in d_study: - s += ' <br><br>[Study title] ' + d_study[k]['title'] + ' <br><br>[Study description] ' + d_study[k]['description'] # <br> is used for breaking lines in html - if k in d_sample: - s += ' <br><br>[Sample title] ' + d_sample[k]['title'] + ' <br><br>[Sample description] ' + d_sample[k]['description'] - - if k in d_experiment: - s += ' <br><br>[Experiment title] ' + d_experiment[k]['title'] + ' <br><br>[Experiment description] ' + d_experiment[k]['description'] - - if s == '': - s = '.' - - lst.append(s) - - lst.append(d_experiment[k]['library_strategy']) - - lst.append(d_experiment[k]['library_source']) - - print('%s' % ('\t'.join(lst))) |