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2025-06-10Remove not real tissue type: 'not collected'HEADmasterLan Hui
2025-06-04Make cleaner tissue namesLan Hui
2025-06-03Get more complete tissue information from ena_sample.xmlLan Hui
2025-05-21TAG 'development stage' may also contain tissue infoLan Hui
2025-05-20Extract a function to handle tissue type infoLan Hui
2025-05-20Derive better tissue namesLan Hui
2025-05-15Show NA as string 'NA', do not silently omit itLan Hui
2025-05-14Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-14TODO: speed things upHui Lan
2025-05-14Awk command to count the number of columnsLan Hui
2025-05-13Fix SyntaxWarning errorLan Hui
2025-05-13Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-13Deal with the case where the quant file is empty (0 KB)Lan Hui
2025-05-13Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-13Correct typoLan Hui
2025-05-08Work fewer hoursHui Lan
2025-05-07The variable new_dir_name is unnecessary, so remove itHui Lan
2025-05-06Turn on wget's quiet mode, so that it won't show info about the downloading p...Hui Lan
2025-05-03download_and_map.py: download and map more if there is still time, even after...Lan Hui
2025-04-30Which fastq file is under mapping?Hui Lan
2025-04-23Get how many new RNA-seq have been downloaded and mappedLan Hui
2025-04-22Include XML tree structure for each ena data source, ena_*.xmlLan Hui
2025-04-21Fix error: name path is not definedHui Lan
2025-04-20Save RNA_SEQ_INFO_DATABASE; do not need commland-line redirect now.Lan Hui
2025-04-20Remove test file for backup_fileLan Hui
2025-04-20Backup old RNA_SEQ_INFO_DATABASE_JSON and replace it with an updated oneLan Hui
2025-04-20Remove unused linesLan Hui
2025-04-16Describe the code updateLan Hui
2025-04-16Include sample id and study id in the JSON outputLan Hui
2025-04-16Remove unused codeLan Hui
2025-04-16Output some stats, beginning with %%Lan Hui
2025-04-16Fix key errorsLan Hui
2025-04-16Retrieve more tissue information from ena_study.xmlLan Hui
2025-04-16Retrieve more tissue information from read_experimentLan Hui
2025-04-15Retrieve more tissue informationLan Hui
2025-04-14Futher improve XML processing logicHui Lan
2025-04-13Parse ENA records XML files. It seems that XML structure for experiment, stu...Hui Lan
2025-04-13Fix typo 'expriment' in 'read_expriment'Hui Lan
2025-04-12Show script name in the log line.Hui Lan
2025-04-12Save ENA records to XML files under Data/temp/Hui Lan
2025-04-09Run this file from time to time to get the most recent RNA-Seq records at ENAHui Lan
2025-04-09MaintenanceHui Lan
2025-04-06Show number of remaining RNA-Seq data to reflect remaining workHui Lan
2025-04-06Remove the line in configure.py that caused downloading not work for 4 daysHui Lan
2025-04-02Reverse download log lines and write them to a new file download_log_reversed...Hui Lan
2025-03-09Remove the experimental file killprocess.pyHui Lan
2025-03-09Kill wget if it takes too longHui Lan
2025-03-09Append DONE to the download log in case the downloading process cannot move o...Hui Lan
2025-03-09Sync changes made on my Ubuntu desktop machine i7-13700HHui Lan
2025-03-09configure.pyHui Lan
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