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AgeCommit message (Expand)Author
2024-08-26JSON file should look like '{key:value}' but not ['{key:value}']Lan Hui
2024-08-26Use R package jsonlite instead of rjson, to support the 'digits' option, whic...Lan Hui
2024-08-17[mergeTPM.py] correct grammar errorLan Hui
2024-08-17merge all TPM files and put the merged file in folder assembleLan Hui
2024-08-16Count all downloaded RUNsLan Hui
2024-08-11Required Python modulesLan Hui
2024-08-11Remove temporary fileLan Hui
2024-08-11dos2unixLan Hui
2024-08-10[create_edges0B.py] Correct Python script nameHui Lan
2024-08-10[create_edges0.py] Store edges in folder ../Data/history/edges/many_targetsHui Lan
2024-08-10[update_network.py] Do not generation json files for gene expression if not d...Hui Lan
2024-08-09[update_network.py] Simplify codeHui Lan
2024-08-08Remove index.htmlHui Lan
2024-08-08Improve memory efficency while building TPM.txtHui Lan
2024-08-07Use TPM_FILE instead of TPM_TABLEHui Lan
2024-08-07Fix error occurred while running update_network.pyHui Lan
2024-08-07[update_network.py] Rename FILE_TIMESTAMP to TIMESTAMP_FILEHui Lan
2024-08-07Important filesHui Lan
2024-08-07Review update_network.pyHui Lan
2024-08-07Put the definition of make_paths() in utils.py because multiple places use itHui Lan
2024-08-07Important files and directoriesHui Lan
2024-08-06update_network.py: delete the 'merge edge' stuff because this is the job of u...Hui Lan
2024-08-06merge_edges.py: add some commentsHui Lan
2024-08-05update_network_by_force.py: improve code speedHui Lan
2024-08-05update_network_by_force.py: fix runtime errorHui Lan
2024-08-05update_network_by_force.py: review and make updatesHui Lan
2024-08-05Remove testlog.txt because it is no longer neededHui Lan
2024-08-05Update write_log_file() so that it put the most recent message on the top; re...Hui Lan
2024-08-04Do not record duplicate edges (to save space). May take longer to run.Hui Lan
2022-12-04create_edges_mixtool.R: enable command line argumentHui Lan
2022-11-20Fix the following errors while running create_edges0B.pyHui Lan
2022-11-20update_network.py: no longer need to redirect to fileHui Lan
2022-11-11correlation_per_group_fixed_number.R: fix 'argument is of length zero' error.Hui Lan
2022-11-09correlation_per_group_fixed_number.R: simplifyHui Lan
2022-11-07update_network_by_force.py: back up the edge file once a month.Hui Lan
2022-11-05Make correlation_per_group_fixed_number.R work, and update its upstream scrip...Hui Lan
2022-10-13configure.py: update TPM renewal intervalHui Lan
2022-10-10configure.py: update the value of BUILDRMATRIX_RENEW_INTERVALHui Lan
2022-10-10QUICKSTART.rst: update section Automating downloading and updating the network.Hui Lan
2022-10-09QUICKSTART.rst: exchange two paragraphs.Hui Lan
2022-10-09QUICKSTART.rst: update global config variable name.Hui Lan
2022-10-09Shorten config variable name, remove 'PARAMETER_FOR_'Hui Lan
2022-10-09merge_edges.py: do not use HTML tags if the info is written to databaseHui Lan
2022-10-09merge_edges.py: removed a commented-out line.Hui Lan
2022-10-07Change the place used to store downloaded raw RNASeq data.Hui Lan
2022-10-05configure.py: be more specific about 'memory' - not computer memory, but brai...Hui Lan
2021-07-27configure.py: double daily downloads.Hui Lan
2021-07-25utils.py: the statistics line must be inside the with context manager in orde...Hui Lan
2021-07-24utils.py: add info such as number of new edges and modification time.Hui Lan
2021-07-23utils.py: header for edges-diff.txt.Hui Lan
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