diff options
| author | Hui Lan <lanhui@zjnu.edu.cn> | 2022-10-09 15:07:57 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2022-10-09 15:07:57 +0800 |
| commit | efb889c19119acc62c7000d371c123bac43e8344 (patch) | |
| tree | 4b8871c1adecac23c052283046761db978a0315d | |
| parent | 8057467f9547afc07339a36cd2c05c170faffb3a (diff) | |
QUICKSTART.rst: update global config variable name.
| -rw-r--r-- | brain.documentation/QUICKSTART.rst | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/brain.documentation/QUICKSTART.rst b/brain.documentation/QUICKSTART.rst index ada02d8..7025c09 100644 --- a/brain.documentation/QUICKSTART.rst +++ b/brain.documentation/QUICKSTART.rst @@ -2,12 +2,12 @@ B R A I N
==============================
-:Authors: Hui Lan
+:Authors: Lan Hui
-:Version: 0.1.5 of 2021-02-06
+:Version: 0.1.6 of 2022-10-09
-*Revision history: 9 June 2017, 22 June 2017, 4 July 2017, 11 July 2017 (created Section Drawing sub-networks), 18 July 2017 (created Section Uploading peak files), 10 October 2017 ('Enter a set of genes' under Section Exploring the network; created Section uRNA), 24 Jan 2018 (Enter 'AT1G24260 AGL9;SEP3 tissue specific tau 1.9' under Section Exploring the network), 3 August 2019 (design considerations), 5 August 2019 (updated create_edges0.py, added a section FAQs), 7 August 2019 (files needed for drawing a scatterplot online), 11 August 2019 (added information for correlation_per_group_fixed_number.R), 22 November 2019 (review and revise the entire content of this documentation), 4 April 2020 (use html_network.py to generate static html pages that contain a gene's regulators and regulatees; use cron job to copy these files to the web application), 6 February 2021 (write a section describing the running environment for brain)*
+*Revision history: 9 June 2017, 22 June 2017, 4 July 2017, 11 July 2017 (created Section Drawing sub-networks), 18 July 2017 (created Section Uploading peak files), 10 October 2017 ('Enter a set of genes' under Section Exploring the network; created Section uRNA), 24 Jan 2018 (Enter 'AT1G24260 AGL9;SEP3 tissue specific tau 1.9' under Section Exploring the network), 3 August 2019 (design considerations), 5 August 2019 (updated create_edges0.py, added a section FAQs), 7 August 2019 (files needed for drawing a scatterplot online), 11 August 2019 (added information for correlation_per_group_fixed_number.R), 22 November 2019 (review and revise the entire content of this documentation), 4 April 2020 (use html_network.py to generate static html pages that contain a gene's regulators and regulatees; use cron job to copy these files to the web application), 6 February 2021 (write a section describing the running environment for brain), 9 October 2022 (remove PARAMETER_FOR from PARAMETER_FOR_BUILDRMATRIX_RENEW_INTERVAL)*
.. contents::
@@ -106,7 +106,7 @@ Downloading and mapping RNA-seq data is achieved by executing download.and.map.p Of course, if we get mapped RNA-seq data from elsewhere (not from running download_and_map.py), then we just need to copy them manually to Data/R/Mapped/public for BRAIN to incorperate them in the next update.
-update_network.py periodically checks whether BRAIN has got enough new RNA-seq samples. If yes, then it will update parameter_for_buildRmatrix.txt. The user can change variables PARAMETER_FOR_BUILDRMATRIX_RENEW_INTERVAL and MIN_RNA_SEQ_INCREASE in configure.py to customize the update frequency.
+update_network.py periodically checks whether BRAIN has got enough new RNA-seq samples. If yes, then it will update parameter_for_buildRmatrix.txt. The user can change variables BUILDRMATRIX_RENEW_INTERVAL and MIN_RNA_SEQ_INCREASE in configure.py to customize the update frequency.
The user manually updates paramter_for_buildCmatrix.txt. (Automatic updating is possible, but not well tested. See upload.peak.files_ for more details.)
|