[update_network.py] Do not generation json files for gene expression if not do webapp

1 files changed, 5 insertions, 2 deletions

diff --git a/Code/update_network.py b/Code/update_network.py
index f4ceda1..0d944fa 100755
--- a/Code/update_network.py
+++ b/Code/update_network.py
@@ -529,9 +529,12 @@ def check_rnaseq_info():
 
 
 # main
+
 FILE_LIST_TO_CHECK = [PARAMETER_FOR_BUILDCMATRIX, PARAMETER_FOR_BUILDRMATRIX, PARAMETER_FOR_NET, \
                       MERGED_EDGE_FILE, BINDING_FILE, TPM_FILE] # a list of important files
 
+PREPARE_JSON_FOR_WEBAPP = False
+
 make_important_dirs() # make important directories (if non-existent) for holding various kinds of files, must be put after os.chdir(CODE_DIR)
 #validate_webapp_dir(PARAMETER_FOR_NET) # make sure the directory Webapp contains necessary files, e.g., genes.json.
 
@@ -684,13 +687,13 @@ if 'TPM.txt' in updated_file_list: # we could _touch_ TPM.txt to make it recent.
     cmd = 'python3 make_target_tf.py %s > %s' % (PARAMETER_FOR_NET, TARGET_TF_FILE)
     os.system(cmd)
 
-    if os.path.exists(TPM_FILE):
+    if PREPARE_JSON_FOR_WEBAPP and os.path.exists(TPM_FILE):
         write_log_file('[update_network.py] Update ../Data/history/expr/json using the new TPM.txt.  Don\'t forget to update the static/edges/json folder in the web application.', UPDATE_NETWORK_LOG_FILE)
         ## json -- make/renew json directory for displaying scatterplots
         cmd = 'python3 slice_TPM_to_JSON.py %s' % (PARAMETER_FOR_NET)
         os.system(cmd) # turn this on if we are going to use this TPM.txt for displaying scatterplots
 
-    if os.path.exists(BINDING_FILE):
+    if PREPARE_JSON_FOR_WEBAPP and os.path.exists(BINDING_FILE):
         write_log_file('[update_network.py] Update directory ../Data/history/bind/json2.  Don\'t forget to copy json2 to static/edges in the web application.', UPDATE_NETWORK_LOG_FILE)
         cmd = 'python3 slice_binding_to_JSON.py %s' % (PARAMETER_FOR_NET)
         os.system(cmd) # turn this on if we are going to use this binding.txt for displaying bar charts of binding strengths