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authorHui Lan <lanhui@zjnu.edu.cn>2021-02-10 14:37:43 +0800
committerHui Lan <lanhui@zjnu.edu.cn>2021-02-10 14:37:43 +0800
commit88c0ce1469e59448f5ca97d60d10e15be8826065 (patch)
tree9c02530525d32e3366f1f217ced61edecdb61a41 /Code
parentaf52e015cbe1bcdbc3130a62b7c2c577d488c459 (diff)
test.py: make it work.
Diffstat (limited to 'Code')
-rw-r--r--Code/test.py8
1 files changed, 3 insertions, 5 deletions
diff --git a/Code/test.py b/Code/test.py
index 0ddae43..92bb2bf 100644
--- a/Code/test.py
+++ b/Code/test.py
@@ -5,12 +5,10 @@ def read_ena_data_info_json(fname):
with open(fname) as json_data:
json_dict = json.load(json_data)
for run_id in json_dict:
- if d[run_id]['library_strategy'].lower() == 'rna-seq' and d[run_id]['library_source'].lower() == 'transcriptomic':
+ if json_dict[run_id]['library_strategy'].lower() == 'rna-seq' and json_dict[run_id]['library_source'].lower() == 'transcriptomic':
d[run_id] = 1
return d
-d = read_ena_data_info_json('../Data/information/rnaseq_info_database.json.temp')
-for k in d:
- print('%s\t%s' % (d[k]['library_strategy'], d[k]['library_source']))
-
+d = read_ena_data_info_json('../Data/information/rnaseq_info_database.json')
+print(len(d))