download_and_map.py: fix name d not defined error.

1 files changed, 2 insertions, 2 deletions

diff --git a/Code/download_and_map.py b/Code/download_and_map.py
index 0c7bfb5..aeeb3b3 100644
--- a/Code/download_and_map.py
+++ b/Code/download_and_map.py
@@ -90,9 +90,9 @@ def make_download_list(mapped_dir, rna_data_info_dict):
     mapped_run_ids = get_list(DOWNLOADED_SRA_ID_LOG_FILE)

     small_ids = get_list(IGNORED_SRA_ID_LOG_FILE) # these files are too small

     for run_id in sorted(rna_data_info_dict.keys(), reverse=True): # SRR first, then ERR, then DRR

-        include_me = True if d[run_id]['library_strategy'].lower() == 'rna-seq' and  d[run_id]['library_source'].lower() == 'transcriptomic' else False

+        include_me = True if rna_data_info_dict[run_id]['library_strategy'].lower() == 'rna-seq' and  rna_data_info_dict[run_id]['library_source'].lower() == 'transcriptomic' else False

         if not (run_id + '_quant.txt') in mapped_files and (not run_id in result) and (not run_id in small_ids) and (not run_id in mapped_run_ids) and include_me: # not mapped yet and is RNA-seq

-            result.append(x)

+            result.append(run_id)

     return result