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39 hoursUpdate data flow chart in the docLan Hui
9 daysCopy updated gene expression json files to hypogen's json folderLan Hui
9 daysWrite a bash script for updating json files in Data/history/expr/json/Lan Hui
10 daysMerge branch 'master' of 118.25.96.118:~/BRAINCLLan Hui
14 daysget_mapped_data.py: do not disconnect from the Redis ServerHui Lan
2025-09-29Redis troubleshootingLan Hui
2025-09-29Merge branch 'master' of 118.25.96.118:~/BRAINCLLan Hui
2025-09-29Merge branch 'master' of 118.25.96.118:~/BRAINCLLan Hui
2025-08-27Fix 'function download_log_file not found' errorHui Lan
2025-08-26Remove the publish quant data stuff from download_and_map.py. Publish using ↵Hui Lan
publish_mapped_data.py.
2025-08-26Use the correct function write log fileHui Lan
2025-08-19Running the publisher as a seperate script seems solved the problem of not ↵Hui Lan
being able to receive messages.
2025-08-11Why the message cannot be received?Hui Lan
2025-08-06[download_and_map.py] Anything wrong in redis public? Why I cannot see the ↵Hui Lan
published data on my subscriber side (Raspberry Pi 5)
2025-08-06Test whether REDIS Channel can cache not-consumed dataHui Lan
2025-07-31Quick notes on how to setup redis serverLan Hui
2025-07-31Fix unmatched ')' errorLan Hui
2025-07-31import path to log fileLan Hui
2025-07-31Test redis tomorrow morningLan Hui
2025-07-31Test whether redis worksLan Hui
2025-07-30Use redis to transfer newly mapped data [not tested]Lan Hui
2025-07-21Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-07-21Make a file for recording bugs.Hui Lan
2025-06-22Less downloading during the short semesterHui Lan
2025-06-10Remove not real tissue type: 'not collected'Lan Hui
2025-06-04Make cleaner tissue namesLan Hui
2025-06-03Get more complete tissue information from ena_sample.xmlLan Hui
2025-05-21TAG 'development stage' may also contain tissue infoLan Hui
2025-05-20Extract a function to handle tissue type infoLan Hui
2025-05-20Derive better tissue namesLan Hui
2025-05-15Show NA as string 'NA', do not silently omit itLan Hui
2025-05-14Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-14TODO: speed things upHui Lan
2025-05-14Awk command to count the number of columnsLan Hui
2025-05-13Fix SyntaxWarning errorLan Hui
2025-05-13Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-13Deal with the case where the quant file is empty (0 KB)Lan Hui
2025-05-13Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-13Correct typoLan Hui
2025-05-08Work fewer hoursHui Lan
2025-05-07The variable new_dir_name is unnecessary, so remove itHui Lan
2025-05-06Turn on wget's quiet mode, so that it won't show info about the downloading ↵Hui Lan
process, therefore reducing the amount of data written to /var/lanhui/mail
2025-05-03download_and_map.py: download and map more if there is still time, even ↵Lan Hui
after having processed DAILY_MAP_NUM
2025-04-30Which fastq file is under mapping?Hui Lan
2025-04-23Get how many new RNA-seq have been downloaded and mappedLan Hui
2025-04-23Useful sed command for getting the number of columns in TPM.txtLan Hui
2025-04-22Include XML tree structure for each ena data source, ena_*.xmlLan Hui
2025-04-21Include dot file that can render scripts dependenciesLan Hui
2025-04-21To include Graphviz dot fileLan Hui
2025-04-21Update doc 3Lan Hui
generated by cgit v1.2.1 (git 2.18.0) at 2025-10-14 18:46:57 +0000