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| author | Lan Hui <lanhui@zjnu.edu.cn> | 2025-05-13 15:40:05 +0800 |
|---|---|---|
| committer | Lan Hui <lanhui@zjnu.edu.cn> | 2025-05-13 15:40:05 +0800 |
| commit | f6fb6ee751fee3d2cfa58232fbaffa8f2b6cdf9d (patch) | |
| tree | b73cd077c9c90cd1f1ed3104e4303b2bae2dbf43 | |
| parent | 663921a828b9f419a1892edfec190f5e07c6d55a (diff) | |
Deal with the case where the quant file is empty (0 KB)
| -rw-r--r-- | Code/make_parameter_rnaseq.py | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/Code/make_parameter_rnaseq.py b/Code/make_parameter_rnaseq.py index f9c7d26..e7b971e 100644 --- a/Code/make_parameter_rnaseq.py +++ b/Code/make_parameter_rnaseq.py @@ -84,6 +84,8 @@ def non_zero_ratio(fname): if not tpm == '0' and not 'nan' in tpm:
non_zero_count += 1
total_count += 1
+ if total_count < 1:
+ return 0.0
return 1.0 * non_zero_count / total_count
def get_rna_word_count(s):
|