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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2025-04-30 19:27:45 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2025-04-30 19:27:45 +0800 |
| commit | afd2850262ec90208a439b66a1876041c6d9c7d8 (patch) | |
| tree | 25709dd929be95e33b3d35c8df83c897b00cc6e8 | |
| parent | c2e1d9db7c59daa9fa474b90539dcda9b848d4e9 (diff) | |
Which fastq file is under mapping?
| -rw-r--r-- | Code/get_TPM_by_salmon.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/Code/get_TPM_by_salmon.py b/Code/get_TPM_by_salmon.py index a4ce3ff..461c2c8 100644 --- a/Code/get_TPM_by_salmon.py +++ b/Code/get_TPM_by_salmon.py @@ -14,7 +14,8 @@ # Last modified by Hui 10 Sep 2019
import sys, os, glob, shutil
-from configure import SALMON, SALMON_INDEX, TRANSCRIPTOME, SALMON_MAP_RESULT_DIR, KMER
+from log import write_log_file
+from configure import SALMON, SALMON_INDEX, TRANSCRIPTOME, SALMON_MAP_RESULT_DIR, KMER, UPDATE_NETWORK_LOG_FILE
#TRANSCRIPTOME = '/home/hui/tair10/AtRTD2_19April2016.fa'
#TRANSCRIPTOME = '../Data/information/ath_genes_index_v2.fa'
@@ -140,3 +141,4 @@ for k in src_id: src_dir = src_id[k][0]
file_id = k
get_TPM(src_dir, file_id, SALMON_INDEX, SALMON_MAP_RESULT_DIR)
+ write_log_file('[get_TPM_by_salmon.py] Mapped %s' % k, UPDATE_NETWORK_LOG_FILE)
|