| Age | Commit message (Expand) | Author |
|---|
| 2021-02-10 | download_and_map.py: adpat this script to use the latest rnaseq_info_database... | Hui Lan |
| 2021-02-10 | parse_ena_xml.py: adapt the script to use the latest meta data. | Hui Lan |
| 2021-02-09 | update_network_by_force.py: move the position of the 'update done' log. | Hui Lan |
| 2021-02-09 | overlap.py: while. | Hui Lan |
| 2021-02-09 | update_network_by_force.py: compute overlap with AtRegNet.20210208.csv. | Hui Lan |
| 2021-02-09 | overlap.py: compare predicted edges with gold standard (osu AtRegNet.csv) edges. | Hui Lan |
| 2021-02-09 | update_network.py: code review. | Hui Lan |
| 2021-02-06 | brain.documentation/QUICKSTART.rst: update version info and change log. | Hui Lan |
| 2021-02-06 | brain.documentation/QUICKSTART.rst: a Ubuntu server. | Hui Lan |
| 2021-02-06 | brain.documentation/QUICKSTART.rst: specify the running environment. | Hui Lan |
| 2021-02-06 | update .gitignore such that it could track QUICKSTART.rst in brain.documentat... | Hui Lan |
| 2021-02-06 | update .gitignore such that it could track QUICKSTART.rst in brain.documentat... | Hui Lan |
| 2021-02-06 | Move edge files in edge_pool to /disk1/edge_pool to save space in the workspace. | Hui Lan |
| 2020-12-13 | make_parameter_rnaseq.py: if a line in quant.sf is not complete, ignore this ... | Hui Lan |
| 2020-10-27 | buildRmatrix.py: use a string to store the max expression level from isoforms... | Hui Lan |
| 2020-10-27 | buildRmatrix.py: use a string to store the max expression level from isoforms. | Hui Lan |
| 2020-10-21 | update_network.py: make TPM.txt. | Hui Lan |
| 2020-10-10 | buildRmatrix.py: use string instead of float to store TPM values. This scrip... | Hui Lan |
| 2020-08-27 | buildRmatrix.py: get max value eariler. | Hui Lan |
| 2020-08-27 | buildRmatrix.py: remove a redundant line. | Hui Lan |
| 2020-08-16 | html_network.py: make URL for edge information such as AT3G09600_AT1G49720_0.... | Hui Lan |
| 2020-08-15 | html_network.py: make URL for edge information such as AT3G09600_AT1G49720_0.... | Hui Lan |
| 2020-08-14 | start_webapp.py and util_networkx.py: remove them (they are in /var/www/brain... | Hui Lan |
| 2020-08-14 | html_network.py: make URL for edge information such as AT3G09600_AT1G49720_0.... | Hui Lan |
| 2020-05-05 | update_netowrk_by_force.py: curl http://118.25.96.118/brain/before should be ... | Hui Lan |
| 2020-05-05 | update_netowrk_by_force.py: check why merge_edges.py does not fully work. | Hui Lan |
| 2020-05-04 | merge_edges.py: Remove 'May take a while.' Actually, after insertion speed i... | Hui Lan |
| 2020-05-04 | merge_edges.py: Remove colon after [merge_edges.py]. | Hui Lan |
| 2020-05-04 | merge_edges.py: rename make_new_edge2. Remove 2. | Hui Lan |
| 2020-05-04 | merge_edges.py: make sqlite insert really fast. Commit in the end instead of... | Hui Lan |
| 2020-05-04 | merge_edges.py: string does not have isnumeric method. | Hui Lan |
| 2020-05-03 | download_and_map.py: when download_log.txt contains blank lines, this script ... | Hui Lan |
| 2020-05-03 | configure.py: fewer daily downloads | Hui Lan |
| 2020-05-02 | download_and_map.py: lower the requirement of available disk space to make do... | Hui Lan |
| 2020-04-04 | Modified .gitignore | Hui Lan |
| 2020-04-04 | Modified .gitignore | Hui Lan |
| 2020-03-27 | update_network_by_force.py: the number of %s should be the same as the number... | Hui Lan |
| 2020-03-27 | html_network.py: string like 'F3'H' will cause syntax error in JavaScript. js... | Hui Lan |
| 2020-03-27 | html_network.py: string like 'F3'H' will cause syntax error in JavaScript. | Hui Lan |
| 2020-03-27 | update_network_by_force.py: code for build table of regulators and regulatees. | Hui Lan |
| 2020-03-26 | html_network.py: don't show intermediate result | Hui Lan |
| 2020-03-26 | html_network.py: remove many lines to make it simpler | Hui Lan |
| 2020-02-15 | merge_edges.py: remove old function make_new_edge() | Hui Lan |
| 2020-02-15 | update_network_by_force.py: enable visiting the web app each time the network... | Hui Lan |
| 2020-02-15 | merge_edges.py: now db_fname has a place to print | Hui Lan |
| 2020-02-15 | merge_edges.py: an integer in a list prevents the join method from working | Hui Lan |
| 2020-02-15 | update_network_by_force.py: disable visiting the web app each time when runni... | Hui Lan |
| 2020-02-15 | merge_edges.py: a more memory efficient method to compute an edge's net strength | Hui Lan |
| 2020-02-15 | merge_edges.py: do not show edge file names in network.log | Hui Lan |
| 2020-02-15 | merge_edges.py: datetime.now() dose not work. Should be datetime.datetime.now() | Hui Lan |
