Move edge files in edge_pool to /disk1/edge_pool to save space in the workspace.

3 files changed, 5 insertions, 4 deletions

diff --git a/Code/configure.py b/Code/configure.py
index 39e6bca..9f159c1 100644
--- a/Code/configure.py
+++ b/Code/configure.py
@@ -49,7 +49,7 @@ MEMORY_STRENGTH = 365 # strength of memory, larger value means better memory
 MAPPED_CDATA_DIR = '../Data/C/Mapped' # mapped ChIp-seq data

 

 # Used in merge_edges.py

-EDGE_POOL_DIR = '../Data/history/edge_pool'

+EDGE_POOL_DIR = '/disk1/edge_pool'

 MERGED_EDGE_FILE = '../Data/temp/edges.txt'

 

 

diff --git a/Code/create_edges0.py b/Code/create_edges0.py
index 75cb1e1..f124370 100644
--- a/Code/create_edges0.py
+++ b/Code/create_edges0.py
@@ -4,7 +4,7 @@
 #

 # Quickly create edges using all samples in TPM.txt.  TF and targets

 # are from target_tf.txt.  Results will be written to

-# ../Data/history/edge_pool/edges.txt.simple.correlation.all.conditions.date

+# EDGE_POOL_DIR/edges.txt.simple.correlation.all.conditions.date

 # target_tf.txt is produced by make_target_tf.py.

 # 

 #

@@ -15,13 +15,14 @@ import sys, os, operator, itertools
 from datetime import datetime

 from geneid2name import make_gene_name_AGI_map_dict, get_gene_name

 from param4net import make_global_param_dict

+from configure import EDGE_POOL_DIR

 

 TARGET_FILE   = '../Data/temp/all_targets.txt'

 TF_FILE       = '../Data/temp/all_tfs.txt'

 RESULT_FILE   = '../Data/temp/corr_all.txt'

 R_SCRIPT_FILE = '../Data/temp/compute_simple_correlation.r'

 

-HISTORY_DIR       = '../Data/history/edge_pool'   # edges.txt.* files are here

+HISTORY_DIR       = EDGE_POOL_DIR   # edges.txt.* files are here

 

 

 def get_value(s, delimit):

diff --git a/Code/update_network.py b/Code/update_network.py
index 415179c..f0e4ec2 100755
--- a/Code/update_network.py
+++ b/Code/update_network.py
@@ -97,7 +97,7 @@ def make_important_dirs():
     make_paths('../Data/C/Mapped')
     make_paths('../Data/C/Raw')    
     make_paths('../Data/history/edges')
-    make_paths('../Data/history/edge_pool')    
+    make_paths(EDGE_POOL_DIR)    
     make_paths('../Data/history/bind')
     make_paths('../Data/history/expr')
     make_paths('../Webapp/static/json')