From bc187a21fd45cf1a52f7530c967047db715a2cd0 Mon Sep 17 00:00:00 2001
From: Hui Lan <lanhui@zjnu.edu.cn>
Date: Sat, 6 Feb 2021 15:02:52 +0800
Subject: Move edge files in edge_pool to /disk1/edge_pool to save space in the
 workspace.

---
 Code/configure.py      | 2 +-
 Code/create_edges0.py  | 5 +++--
 Code/update_network.py | 2 +-
 3 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/Code/configure.py b/Code/configure.py
index 39e6bca..9f159c1 100644
--- a/Code/configure.py
+++ b/Code/configure.py
@@ -49,7 +49,7 @@ MEMORY_STRENGTH = 365 # strength of memory, larger value means better memory
 MAPPED_CDATA_DIR = '../Data/C/Mapped' # mapped ChIp-seq data
 
 # Used in merge_edges.py
-EDGE_POOL_DIR = '../Data/history/edge_pool'
+EDGE_POOL_DIR = '/disk1/edge_pool'
 MERGED_EDGE_FILE = '../Data/temp/edges.txt'
 
 
diff --git a/Code/create_edges0.py b/Code/create_edges0.py
index 75cb1e1..f124370 100644
--- a/Code/create_edges0.py
+++ b/Code/create_edges0.py
@@ -4,7 +4,7 @@
 #
 # Quickly create edges using all samples in TPM.txt.  TF and targets
 # are from target_tf.txt.  Results will be written to
-# ../Data/history/edge_pool/edges.txt.simple.correlation.all.conditions.date
+# EDGE_POOL_DIR/edges.txt.simple.correlation.all.conditions.date
 # target_tf.txt is produced by make_target_tf.py.
 # 
 #
@@ -15,13 +15,14 @@ import sys, os, operator, itertools
 from datetime import datetime
 from geneid2name import make_gene_name_AGI_map_dict, get_gene_name
 from param4net import make_global_param_dict
+from configure import EDGE_POOL_DIR
 
 TARGET_FILE   = '../Data/temp/all_targets.txt'
 TF_FILE       = '../Data/temp/all_tfs.txt'
 RESULT_FILE   = '../Data/temp/corr_all.txt'
 R_SCRIPT_FILE = '../Data/temp/compute_simple_correlation.r'
 
-HISTORY_DIR       = '../Data/history/edge_pool'   # edges.txt.* files are here
+HISTORY_DIR       = EDGE_POOL_DIR   # edges.txt.* files are here
 
 
 def get_value(s, delimit):
diff --git a/Code/update_network.py b/Code/update_network.py
index 415179c..f0e4ec2 100755
--- a/Code/update_network.py
+++ b/Code/update_network.py
@@ -97,7 +97,7 @@ def make_important_dirs():
     make_paths('../Data/C/Mapped')
     make_paths('../Data/C/Raw')    
     make_paths('../Data/history/edges')
-    make_paths('../Data/history/edge_pool')    
+    make_paths(EDGE_POOL_DIR)    
     make_paths('../Data/history/bind')
     make_paths('../Data/history/expr')
     make_paths('../Webapp/static/json')
-- 
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