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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2020-03-27 13:24:03 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2020-03-27 13:24:03 +0800 |
| commit | fb75ac99c1cc4da39b7c26ed6bd6b3f6d73d877c (patch) | |
| tree | aeeb306ff07c1a3eb189189d8beabb046ca54a48 | |
| parent | b67e495f7820e0c9c32f2a14361709cfbb3ca2ea (diff) | |
update_network_by_force.py: code for build table of regulators and regulatees.
| -rw-r--r-- | Code/update_network_by_force.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/Code/update_network_by_force.py b/Code/update_network_by_force.py index d6631c5..ead3bf2 100644 --- a/Code/update_network_by_force.py +++ b/Code/update_network_by_force.py @@ -9,6 +9,7 @@ import glob import time from datetime import datetime from configure import HISTORY_DIR, HISTORY_DIR2, UPDATE_NETWORK_LOG_FILE, MERGED_EDGE_FILE, EDGE_POOL_DIR +from configure import PARAMETER_FOR_BUILDCMATRIX, PARAMETER_FOR_BUILDRMATRIX, PARAMETER_FOR_NET from backup_files import copy_and_backup_file ########## Helper functions ####################### @@ -140,7 +141,9 @@ if os.path.getmtime(MERGED_EDGE_FILE) < os.path.getmtime(EDGE_POOL_DIR): # edge write_log_file('[update_network_by_force.py] Number of lines in the new edges.txt: %d.' % (num_line(MERGED_EDGE_FILE)), UPDATE_NETWORK_LOG_FILE) write_log_file('[update_network_by_force.py] %s' % (summarize_edge_file(MERGED_EDGE_FILE)), UPDATE_NETWORK_LOG_FILE) manual_copy_commands = 'Please copy files to the web application: sudo cp /home/lanhui/brain/Data/temp/edges.txt /var/www/brain/brain/static/edges/edges.txt sudo cp /home/lanhui/brain/Data/temp/html_edges/edges.sqlite /var/www/brain/brain/static/edges curl http://118.25.96.118/brain/before' - write_log_file('[update_network_by_force.py] %s' % (manual_copy_commands), UPDATE_NETWORK_LOG_FILE) + write_log_file('[update_network_by_force.py] %s' % (manual_copy_commands), UPDATE_NETWORK_LOG_FILE) + cmd = 'html_network.py -f %s -r ../Data/parameter/parameter_for_buildRmatrix.txt -c ../Data/parameter/parameter_for_buildCmatrix.txt -n ../Data/parameter/parameter_for_net.txt' % (MERGED_EDGE_FILE, PARAMETER_FOR_BUILDRMATRIX, PARAMETER_FOR_BUILDCMATRIX, PARAMETER_FOR_NET) + os.system(cmd) copy_and_backup_file(MERGED_EDGE_FILE, '../Analysis') # the backup file will be used for further analysis |