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2025-06-04Make cleaner tissue namesLan Hui
2025-06-03Get more complete tissue information from ena_sample.xmlLan Hui
2025-05-21TAG 'development stage' may also contain tissue infoLan Hui
2025-05-20Extract a function to handle tissue type infoLan Hui
2025-05-20Derive better tissue namesLan Hui
2025-05-15Show NA as string 'NA', do not silently omit itLan Hui
2025-05-14Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-14TODO: speed things upHui Lan
2025-05-14Awk command to count the number of columnsLan Hui
2025-05-13Fix SyntaxWarning errorLan Hui
2025-05-13Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-13Deal with the case where the quant file is empty (0 KB)Lan Hui
2025-05-13Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-13Correct typoLan Hui
2025-05-08Work fewer hoursHui Lan
2025-05-07The variable new_dir_name is unnecessary, so remove itHui Lan
2025-05-06Turn on wget's quiet mode, so that it won't show info about the downloading ↵Hui Lan
process, therefore reducing the amount of data written to /var/lanhui/mail
2025-05-03download_and_map.py: download and map more if there is still time, even ↵Lan Hui
after having processed DAILY_MAP_NUM
2025-04-30Which fastq file is under mapping?Hui Lan
2025-04-23Get how many new RNA-seq have been downloaded and mappedLan Hui
2025-04-23Useful sed command for getting the number of columns in TPM.txtLan Hui
2025-04-22Include XML tree structure for each ena data source, ena_*.xmlLan Hui
2025-04-21Include dot file that can render scripts dependenciesLan Hui
2025-04-21To include Graphviz dot fileLan Hui
2025-04-21Update doc 3Lan Hui
2025-04-21Update doc 2Lan Hui
2025-04-21Update docLan Hui
2025-04-21Fix error: name path is not definedHui Lan
2025-04-20Save RNA_SEQ_INFO_DATABASE; do not need commland-line redirect now.Lan Hui
2025-04-20Remove test file for backup_fileLan Hui
2025-04-20Backup old RNA_SEQ_INFO_DATABASE_JSON and replace it with an updated oneLan Hui
2025-04-20Remove unused linesLan Hui
2025-04-16Describe the code updateLan Hui
2025-04-16Include sample id and study id in the JSON outputLan Hui
2025-04-16Remove unused codeLan Hui
2025-04-16Output some stats, beginning with %%Lan Hui
2025-04-16Fix key errorsLan Hui
2025-04-16Retrieve more tissue information from ena_study.xmlLan Hui
2025-04-16Retrieve more tissue information from read_experimentLan Hui
2025-04-15Retrieve more tissue informationLan Hui
2025-04-14Futher improve XML processing logicHui Lan
2025-04-13Parse ENA records XML files. It seems that XML structure for experiment, ↵Hui Lan
study and sample has changed.
2025-04-13Fix typo 'expriment' in 'read_expriment'Hui Lan
2025-04-12Show script name in the log line.Hui Lan
2025-04-12Save ENA records to XML files under Data/temp/Hui Lan
2025-04-09Run this file from time to time to get the most recent RNA-Seq records at ENAHui Lan
2025-04-09MaintenanceHui Lan
2025-04-06Show number of remaining RNA-Seq data to reflect remaining workHui Lan
2025-04-06Remove the line in configure.py that caused downloading not work for 4 daysHui Lan
2025-04-02Reverse download log lines and write them to a new file ↵Hui Lan
download_log_reversed.txt so that the most recent log line appears on the top. Purpose: easier to check log from the web browser.
generated by cgit v1.2.1 (git 2.18.0) at 2025-10-31 21:12:38 +0000