diff options
Diffstat (limited to 'Code')
| -rw-r--r-- | Code/download_ena_experiment_records.py | 11 |
1 files changed, 8 insertions, 3 deletions
diff --git a/Code/download_ena_experiment_records.py b/Code/download_ena_experiment_records.py index 11bfc70..d96071f 100644 --- a/Code/download_ena_experiment_records.py +++ b/Code/download_ena_experiment_records.py @@ -5,10 +5,15 @@ # # Note: # (1) The experiment accession IDs are stored in ../Data/information/experiment_ids_lacking_strategy_or_source.txt -# (2) Given an experiment's accession SRX6711770, we can get its full information from the following link -# https://www.ebi.ac.uk/ena/browser/api/xml/SRX6711770 +# (2) Given an experiment's accession SRX6711770, we can get its full information (e.g., whether it is RNA-seq) from the following link https://www.ebi.ac.uk/ena/browser/api/xml/SRX6711770 +# (3) Each run is associated with an experiment. Therefore, we can find whether the run is RNA-seq by first finding its associated experiment accession, then from the experiment +# accession finding its library strategy and library source. +# For example, for run SRR23878410, from https://www.ebi.ac.uk/ena/browser/api/xml/SRR23878410 we know that its associated experiment accession is SRX19690458, and +# from https://www.ebi.ac.uk/ena/browser/api/xml/SRX19690458 we know that its library strategy is RNA-seq and its library source is TRANSCRIPTOMIC. # -# 2025-10-23 +# Last modified by Hui on: +# 2025-10-23 +# 2025-10-24 import urllib.request import os, time, glob |