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| author | Lan Hui <lanhui@zjnu.edu.cn> | 2025-10-05 18:56:22 +0800 |
|---|---|---|
| committer | Lan Hui <lanhui@zjnu.edu.cn> | 2025-10-05 18:56:22 +0800 |
| commit | fbdf9e5c31fb360476beca2657d2696f5103b145 (patch) | |
| tree | 2801be015dd2c4042821de1f59292818a25c308c /Code/update_gene_expression_json.sh | |
| parent | 466dde75d1f16ac72ee47295fdea45d0389fb55c (diff) | |
Write a bash script for updating json files in Data/history/expr/json/
Diffstat (limited to 'Code/update_gene_expression_json.sh')
| -rw-r--r-- | Code/update_gene_expression_json.sh | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/Code/update_gene_expression_json.sh b/Code/update_gene_expression_json.sh new file mode 100644 index 0000000..631f999 --- /dev/null +++ b/Code/update_gene_expression_json.sh @@ -0,0 +1,5 @@ +# Included the newly mapped RNA-seq data. May take several hours. +python3 make_parameter_rnaseq.py > ../Data/parameter/parameter_for_buildRmatrix.txt +python3 buildRmatrix.py ../Data/parameter/parameter_for_buildRmatrix.txt +python3 mergeTPM.py +python3 slice_TPM_to_JSON.py ../Data/parameter/parameter_for_net.txt |