From fbdf9e5c31fb360476beca2657d2696f5103b145 Mon Sep 17 00:00:00 2001 From: Lan Hui Date: Sun, 5 Oct 2025 18:56:22 +0800 Subject: Write a bash script for updating json files in Data/history/expr/json/ --- Code/update_gene_expression_json.sh | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 Code/update_gene_expression_json.sh (limited to 'Code/update_gene_expression_json.sh') diff --git a/Code/update_gene_expression_json.sh b/Code/update_gene_expression_json.sh new file mode 100644 index 0000000..631f999 --- /dev/null +++ b/Code/update_gene_expression_json.sh @@ -0,0 +1,5 @@ +# Included the newly mapped RNA-seq data. May take several hours. +python3 make_parameter_rnaseq.py > ../Data/parameter/parameter_for_buildRmatrix.txt +python3 buildRmatrix.py ../Data/parameter/parameter_for_buildRmatrix.txt +python3 mergeTPM.py +python3 slice_TPM_to_JSON.py ../Data/parameter/parameter_for_net.txt -- cgit v1.2.1