Remove unused code

1 files changed, 0 insertions, 47 deletions

diff --git a/Code/parse_ena_xml.py b/Code/parse_ena_xml.py
index 8d45481..c22ec2a 100644
--- a/Code/parse_ena_xml.py
+++ b/Code/parse_ena_xml.py
@@ -336,50 +336,3 @@ if __name__ == '__main__':
     fname = '../Data/information/rnaseq_info_database.json.temp'
     with open(fname, 'w') as f:
         json.dump(json_dict, f, indent=4)
-
-
-    sys.exit()
-    # Collect information for each run ID
-    for k in sorted(d_run_keys):
-        lst = []
-        lst.append(k)    
-        if k in d_run:
-            if k in d_sample:
-                if d_sample[k]['external_id'] != '.':
-                    lst.append(d_sample[k]['external_id'] + '...' + d_sample[k]['tissue'])            
-                else:
-                    lst.append(d_sample[k]['primary_id'] + '...' + d_sample[k]['tissue'])
-            else:
-                lst.append('.')
-
-            lst.append( d_run[k]['experiment_id'] )
-            lst.append( d_run[k]['study_id'] )
-
-            # for column study_id_PRJ
-            if k in d_study:
-                lst.append( d_study[k]['primary_id'] )
-            else:
-                lst.append( '.' )
-            lst.append( d_run[k]['title'] )
-            lst.append( d_run[k]['alias'] )
-    
-            s = '' # description string
-    
-            if k in d_study:
-                s += ' <br><br>[Study title] '  + d_study[k]['title'] + ' <br><br>[Study description] ' + d_study[k]['description'] # <br> is used for breaking lines in html
-            if k in d_sample:
-                s += ' <br><br>[Sample title] ' + d_sample[k]['title'] + ' <br><br>[Sample description] ' + d_sample[k]['description']
-    
-            if k in d_experiment:
-                s += ' <br><br>[Experiment title] ' + d_experiment[k]['title'] + ' <br><br>[Experiment description] ' + d_experiment[k]['description']
-    
-            if s == '':
-                s = '.'
-    
-            lst.append(s)
-
-            lst.append(d_experiment[k]['library_strategy'])
-
-            lst.append(d_experiment[k]['library_source'])            
-            
-        print('%s' % ('\t'.join(lst)))