make_target_tf.py: format of target_tf.txt.

1 files changed, 2 insertions, 0 deletions

diff --git a/Code/make_target_tf.py b/Code/make_target_tf.py
index 1cb5147..06bc769 100644
--- a/Code/make_target_tf.py
+++ b/Code/make_target_tf.py
@@ -233,6 +233,8 @@ def augment_dict(d, target, tf, cond_lst):
 def target_tf(bind_dict, bind_info_dict, input_dict, glb_param_dict):

     ''' Print lines in this format: target TF ChIP-seq conditions, e.g., ../Data/information/target_tf.txt

     For example, 'AT1G01270       AT3G46640       C0001000008426 C0001000008427 C0001000008428'

+    The three fields are separated by TAB.

+    The last field contains direct binding evidence, and each evidence is separated by a SPACE.

     '''

     d = get_tf(bind_dict, bind_info_dict, input_dict, glb_param_dict)

     # d has the following format {target:{tf1:[c1,c2], tf2:[c2,c3]}, ...  }