From a56956a5db79d947030a74f7ea710fa6e973972c Mon Sep 17 00:00:00 2001 From: Hui Lan Date: Thu, 18 Feb 2021 13:19:20 +0800 Subject: make_target_tf.py: format of target_tf.txt. --- Code/make_target_tf.py | 2 ++ 1 file changed, 2 insertions(+) (limited to 'Code/make_target_tf.py') diff --git a/Code/make_target_tf.py b/Code/make_target_tf.py index 1cb5147..06bc769 100644 --- a/Code/make_target_tf.py +++ b/Code/make_target_tf.py @@ -233,6 +233,8 @@ def augment_dict(d, target, tf, cond_lst): def target_tf(bind_dict, bind_info_dict, input_dict, glb_param_dict): ''' Print lines in this format: target TF ChIP-seq conditions, e.g., ../Data/information/target_tf.txt For example, 'AT1G01270 AT3G46640 C0001000008426 C0001000008427 C0001000008428' + The three fields are separated by TAB. + The last field contains direct binding evidence, and each evidence is separated by a SPACE. ''' d = get_tf(bind_dict, bind_info_dict, input_dict, glb_param_dict) # d has the following format {target:{tf1:[c1,c2], tf2:[c2,c3]}, ... } -- cgit v1.2.1