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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2021-02-09 10:56:56 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2021-02-09 10:56:56 +0800 |
| commit | 57366ce96686f171d429af35ca99a8458a3bf666 (patch) | |
| tree | 99becd7569d64bbb50627f005e161cf8cc42d623 /Code/configure.py | |
| parent | 05a45a1ad23b0d8a7fb5f76f1e04585f080375f9 (diff) | |
update_network.py: code review.
Diffstat (limited to 'Code/configure.py')
| -rw-r--r-- | Code/configure.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/Code/configure.py b/Code/configure.py index 9f159c1..5e329af 100644 --- a/Code/configure.py +++ b/Code/configure.py @@ -34,8 +34,8 @@ PARAMETER_FOR_NET_WIGGELAB_DIURNAL = '../Data/parameter/parameter_for_net_wig BINDING_FILE = '../Data/history/bind/binding.txt'
TPM_FILE = '../Data/history/expr/TPM.txt' # gene expression data
-PARAMETER_FOR_BUILDRMATRIX_RENEW_INTERVAL = 1 # check every 28 days for updating TPM.txt
-MIN_RNA_SEQ_INCREASE = 2 # minimum RNA-seq experiments needed when updating parameter_for_buildRmatrix.txt
+PARAMETER_FOR_BUILDRMATRIX_RENEW_INTERVAL = 14 # check every 28 days for updating TPM.txt
+MIN_RNA_SEQ_INCREASE = 60 # minimum RNA-seq experiments needed when updating parameter_for_buildRmatrix.txt
UPDATE_NETWORK_LOG_FILE = '../Data/log/update.network.log.txt' # network update log. We should check this file from time to time.
NEW_OR_UPDATED_CHIP_FILE = '../Data/log/new.or.updated.chip.file.txt'
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