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# Folder public's modification time
folder1="../Data/R/Mapped/public/"
folder2="../code_review_drawScatterplot/hypogen/json/"
date1=`date -r $folder1 +%s`
date2=`date -r $folder2 +%s`
diff_days=$((($date2 - $date1)/86400)) # time difference in days
echo $date1
echo $date2
if [ $date1 -gt $date2 ]
then
echo "$folder updated in $(date -r $folder1)"
# Included the newly mapped RNA-seq data. May take several hours.
python3 make_parameter_rnaseq.py > ../Data/parameter/parameter_for_buildRmatrix.txt
python3 buildRmatrix.py ../Data/parameter/parameter_for_buildRmatrix.txt
python3 mergeTPM.py
echo "slice TPM to JSON ..."
python3 slice_TPM_to_JSON.py ../Data/parameter/parameter_for_net.txt
echo "Copy updated json files ..."
find ../Data/history/expr/json/ -name "*.json" -exec cp {} ../code_review_drawScatterplot/hypogen/json/ \;
touch $folder2
else
echo "Nothing to update."
fi
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