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# Make target_tf from AtRegNet.txt
# Usage: python make_target_tf_agris.py > ../Data/information/target_tf_agris.txt
fname = '../Data/information/AtRegNet.txt'
sample_id = 'C0000000000001'
f = open(fname)
lines = f.readlines()
f.close()
d = {}
count = 2
duplicate = 0
for line in lines[1:]:
line = line.strip()
lst = line.split('\t')
if len(lst) >= 5:
tf0 = lst[1].upper().strip()
target0 = lst[4].upper().strip()
tf_lst = tf0.split('/')
target_lst = target0.split('/')
for tf in tf_lst:
for target in target_lst:
if tf.startswith('AT') and target.startswith('AT'):
k = target + '.' + tf
if k in d:
#print('Warning at line %d ' % (count))
duplicate += 1
else:
d[k] = [target, tf, sample_id]
count += 1
print('pairs %d' % len(d))
print('duplicate %d' % (duplicate))
for k in sorted(d.keys()):
print('\t'.join(d[k]))
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