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# Purpose: refactoring.
# Create on 10 Aug 2019 by Hui Lan <lanhui@zjnu.edu.cn>
def make_gene_name_AGI_map_dict(fname):
'''
A dictionary that maps gene id to gene name, and gene name to gene id.
fname is ../Data/information/AGI-to-gene-names_v2.txt
'''
d = {}
f = open(fname)
for line in f:
line = line.strip()
lst = line.split()
agi = lst[0].upper()
name_string = lst[1].upper()
d[agi] = name_string
for name in name_string.split(';'):
if not name in d:
d[name] = agi
f.close()
return d
def get_gene_name(gene_id, agi2name_dict):
if gene_id in agi2name_dict and agi2name_dict[gene_id] != gene_id:
gene_name = agi2name_dict[gene_id]
else:
gene_name = '.'
return gene_name
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