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Diffstat (limited to 'brain.documentation')
| -rw-r--r-- | brain.documentation/QUICKSTART.rst | 11 |
1 files changed, 11 insertions, 0 deletions
diff --git a/brain.documentation/QUICKSTART.rst b/brain.documentation/QUICKSTART.rst index bfeba64..535c29b 100644 --- a/brain.documentation/QUICKSTART.rst +++ b/brain.documentation/QUICKSTART.rst @@ -147,6 +147,17 @@ Use *cron job* to schedule running these two scripts on December 25 and December 1 1 25 12 * cd /home/lanhui/brain/Code && python3 download_ena_records.py 1 1 26 12 * cd /home/lanhui/brain/Code && python3 parse_ena_xml.py +download_ena_records.py will download the following files to folder Data/information: + +- ena_read_run.xml +- ena_read_experiment.xml +- ena_sample.xml +- ema_study.xml + +parse_end_xlm.py will use the above four XML files as input, and output the following two files to Data/information: + +- rnaseq_info_database.json (containing run IDs, library_source and library_strategy) +- rnaseq_info_database.txt Automating downloading and updating the network |