diff options
Diffstat (limited to 'Code')
| -rw-r--r-- | Code/update_network_by_force.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/Code/update_network_by_force.py b/Code/update_network_by_force.py index aafa2f0..56f46dc 100644 --- a/Code/update_network_by_force.py +++ b/Code/update_network_by_force.py @@ -11,6 +11,7 @@ from datetime import datetime from configure import HISTORY_DIR, HISTORY_DIR2, UPDATE_NETWORK_LOG_FILE, MERGED_EDGE_FILE, EDGE_POOL_DIR from configure import PARAMETER_FOR_BUILDCMATRIX, PARAMETER_FOR_BUILDRMATRIX, PARAMETER_FOR_NET from backup_files import copy_and_backup_file +from overlap import Overlap ########## Helper functions ####################### def write_log_file(s, fname): @@ -148,3 +149,31 @@ if os.path.getmtime(MERGED_EDGE_FILE) < os.path.getmtime(EDGE_POOL_DIR): # edge write_log_file('[update_network_by_force.py] Update done at %s.\n\n' % (datetime.now().strftime('%Y-%m-%d %H:%M:%S')), UPDATE_NETWORK_LOG_FILE) + + +# Compute overlap + +f = open('../Data/temp/AtRegNet.20210208.csv') +AtRegNet_dict = {} +for line in f: + line = line.strip() + lst = line.split(',') + if lst[0] != 'TFName' and len(lst) > 4: + tf = lst[1].upper().strip() + target = lst[4].upper().strip() + AtRegNet_dict[tf+target] = 100 +f.close() + +f = open(MERGED_EDGE_FILE) +BrainEdges_dict = {} +for line in f: + line = line.strip() + lst = line.split('\t') + tf = lst[1].split()[0] + target = lst[0].split()[0] + score = float(lst[8]) + BrainEdges_dict[tf+target] = score +f.close() + +overlap = Overlap(BrainEdges_dict, 3, AtRegNet_dict, 0) +write_log_file('[update_network_by_force.py] Performance stats - TP:%d, PP:%d, Hit rate: %4.7f while comparing with AtRegNet.20210208.csv.' % (overlap.getTP(), overlap.getNumberOfPositivesInPred(), overlap.getTP()/overlap.getNumberOfPositivesInPred()), UPDATE_NETWORK_LOG_FILE) |