diff options
| -rw-r--r-- | Code/merge_edges.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/Code/merge_edges.py b/Code/merge_edges.py index bf3bf5b..39bbbe7 100644 --- a/Code/merge_edges.py +++ b/Code/merge_edges.py @@ -146,12 +146,12 @@ def make_new_edge(d): ##main -write_log_file('[merge_edges.py]: Go through all edge files in the edge pool %s.' % (EDGE_POOL_DIR) , UPDATE_NETWORK_LOG_FILE) +write_log_file('[merge_edges.py] Go through all edge files in the edge pool %s.' % (EDGE_POOL_DIR) , UPDATE_NETWORK_LOG_FILE) d = {} # d will contain all edges computed so far, where the key is TargetGeneID_TFGeneID, and the value is a list of tuples. Each tuple is a historical edge. file_count = 0 for fname in sorted(glob.glob(os.path.join(EDGE_POOL_DIR, 'edges*.*'))): file_count += 1 - print('[merge_edges.py]: including %s. Dictionary size %d.' % (fname, len(d))) + print('[merge_edges.py] Including %s. Dictionary size %d.' % (fname, len(d))) #write_log_file('[merge_edges.py] including file %s.' % (fname) , UPDATE_NETWORK_LOG_FILE) f = open(fname) @@ -198,7 +198,7 @@ for fname in sorted(glob.glob(os.path.join(EDGE_POOL_DIR, 'edges*.*'))): f.close() -write_log_file('[merge_edges.py]: BRAIN has collected edges from %d files.' % (file_count) , UPDATE_NETWORK_LOG_FILE) +write_log_file('[merge_edges.py] BRAIN has collected edges from %d files.' % (file_count) , UPDATE_NETWORK_LOG_FILE) # make html pages folder_path = '../Data/temp/html_edges' @@ -206,7 +206,7 @@ if not os.path.isdir(folder_path): os.mkdir(folder_path) -write_log_file('[merge_edges.py]: Make text edge file %s ...' % (MERGED_EDGE_FILE), UPDATE_NETWORK_LOG_FILE) +write_log_file('[merge_edges.py] Make text edge file %s ...' % (MERGED_EDGE_FILE), UPDATE_NETWORK_LOG_FILE) fout = open(MERGED_EDGE_FILE, 'w') for k in d: lst = make_new_edge(d[k]) @@ -215,7 +215,7 @@ fout.close() db_fname = os.path.join(folder_path, 'edges.sqlite') -write_log_file('[merge_edges.py]: Make SQLite database file %s. May take a while ...' % (db_fname), UPDATE_NETWORK_LOG_FILE) +write_log_file('[merge_edges.py] Make SQLite database file %s. May take a while ...' % (db_fname), UPDATE_NETWORK_LOG_FILE) if os.path.exists(db_fname): |