diff options
| -rw-r--r-- | Code/merge_edges.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/Code/merge_edges.py b/Code/merge_edges.py index ddd60d4..08e76fb 100644 --- a/Code/merge_edges.py +++ b/Code/merge_edges.py @@ -108,9 +108,9 @@ def fill_database(lst, conn): def compute_time_difference_in_days(t1, t2): ''' t1 and t2 has this format: yyyymmdd. ''' - if not t1.isnumeric() and length(t1) != 8: + if not t1.isdigit() and length(t1) != 8: raise Exception('t1 format wrong in compute_time_difference_in_days.') - if not t2.isnumeric() and length(t2) != 8: + if not t2.isdigit() and length(t2) != 8: raise Exception('t2 format wrong in compute_time_difference_in_days.') t1 = datetime.date(int(t1[:4]), int(t1[4:6]), int(t1[6:])) @@ -148,12 +148,12 @@ def make_new_edge2(d): ##main - +write_log_file('[merge_edges.py] Go through all edge files in the edge pool %s.' % (EDGE_POOL_DIR) , UPDATE_NETWORK_LOG_FILE) d = {} # d will contain all edges computed so far, where the key is TargetGeneID_TFGeneID, and the value is a list of tuples. Each tuple is a historical edge. file_count = 0 for fname in sorted(glob.glob(os.path.join(EDGE_POOL_DIR, 'edges*.*'))): file_count += 1 - print('[merge_edges.py]: including %s.' % (fname)) + print('[merge_edges.py]: including %s. Dictionary size %d.' % (fname, len(d))) #write_log_file('[merge_edges.py] including file %s.' % (fname) , UPDATE_NETWORK_LOG_FILE) f = open(fname) |