diff options
| -rw-r--r-- | Code/configure.py | 3 | ||||
| -rw-r--r-- | Code/download_and_map.py | 2 |
2 files changed, 2 insertions, 3 deletions
diff --git a/Code/configure.py b/Code/configure.py index cdccad5..825cedc 100644 --- a/Code/configure.py +++ b/Code/configure.py @@ -12,8 +12,7 @@ RNA_SEQ_INFO_FILE = '../Data/information/rnaseq_info_database.json' # some data DOWNLOADED_SRA_ID_LOG_FILE = '../Data/log/download_log.txt' # a list of downloaded SRA IDs
IGNORED_SRA_ID_LOG_FILE = '../Data/log/download_log_small_sized_ids.txt' # store SRA IDs with small file size.
MAPPED_RDATA_DIR = '../Data/R/Mapped/public' # mapped RNA-seq (file names ended with _quant.txt) go here
-RAW_RDATA_DIR = '../Data/R/Raw' # downloaded files go here
-
+RAW_RDATA_DIR = '/disk1/Data/R/Raw' # downloaded files go here, was "../Data/R/Raw" (now almost full).
# From update_network.py
# Don'T change the following paths and names
diff --git a/Code/download_and_map.py b/Code/download_and_map.py index aeeb3b3..568032c 100644 --- a/Code/download_and_map.py +++ b/Code/download_and_map.py @@ -340,7 +340,7 @@ if not os.path.exists(RNA_SEQ_INFO_FILE): sys.exit()
# If there is no enough disk space for storing the downloaded sequencing data, then stop
-available_G = 4 * os.statvfs('/home').f_bavail / (1024*1024) # compute available space (in G). Each block has 4k bytes, work for Linux/UNIX systems only
+available_G = 4 * os.statvfs(RAW_RDATA_DIR).f_bavail / (1024*1024) # compute available space (in G). Each block has 4k bytes, work for Linux/UNIX systems only
if available_G < 2 * DAILY_MAP_NUMBER:
print('[download_and_map.py] home directory does not have enough space (only %d G available) ' % (available_G))
write_network_log_file('[download_and_map.py] home directory does not have enough space (only %d G available).' % (available_G), UPDATE_NETWORK_LOG_FILE)
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