Running the publisher as a seperate script seems solved the problem of not being able to receive messages.

1 files changed, 0 insertions, 32 deletions

diff --git a/Code/test_redis_publish2.py b/Code/test_redis_publish2.py
deleted file mode 100644
index eeda27d..0000000
--- a/Code/test_redis_publish2.py
+++ /dev/null
@@ -1,32 +0,0 @@
-import redis
-from configure import DAILY_MAP_NUMBER, MIN_FASTQ_FILE_SIZE, RNA_SEQ_INFO_FILE, DOWNLOADED_SRA_ID_LOG_FILE, IGNORED_SRA_ID_LOG_FILE, UPDATE_NETWORK_LOG_FILE, MAPPED_RDATA_DIR, RAW_RDATA_DIR, SALMON_MAP_RESULT_DIR, REDIS_CHANNEL
-import json, glob, os, time
-from datetime import datetime
-def publish(mapped_data_directory):
-    redis_host = os.getenv('REDIS_HOST', '127.0.0.1')
-    #redis_host = os.getenv('REDIS_HOST', '0.0.0.0')
-    redis_password = os.getenv('REDIS_PASSWORD', '123456')
-    print(redis_password)
-    r = redis.Redis(host=redis_host, port=6379, password=redis_password, db=0)
-    r.publish(REDIS_CHANNEL, json.dumps({'filename':'REDIS_START.txt', 'data':str(datetime.now())}))
-    for fname in glob.glob('%s/*_quant.txt' % (mapped_data_directory.rstrip('/'))):
-        print(fname)
-        try:
-            file_basename = os.path.basename(fname)
-            with open(fname, 'r') as f:
-                data = f.read()
-            r.publish(REDIS_CHANNEL, json.dumps({'filename':file_basename, 'data':data}))
-            time.sleep(3)
-        except Exception as e:
-            print(f'ERROR {e}')
-            r.publish(REDIS_CHANNEL, json.dumps({'filename':'REDIS_ERROR.txt', 'data':str(e)}))
-
-
-# after mapping is finished, move all resulting files to MAPPED_RDATA_DIR
-if glob.glob('%s/*_quant.txt' % (SALMON_MAP_RESULT_DIR.rstrip('/'))) != []:
-    publish(SALMON_MAP_RESULT_DIR)
-    #cmd = 'mv %s/*_quant.txt %s' % (SALMON_MAP_RESULT_DIR.rstrip('/'), MAPPED_RDATA_DIR)
-    #os.system(cmd)
-    print('[download_and_map.py] Done. Check directory %s.' % (os.path.abspath(MAPPED_RDATA_DIR)))
-else:
-    print('[download_and_map.py] No quant files to move.')