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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2022-11-05 22:16:57 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2022-11-05 22:16:57 +0800 |
| commit | 4d2b4aa5a97cc8f640a7b934298c871dbaea18d2 (patch) | |
| tree | ba10eb723f737c2d4e281f795c75437847ee4b7a /Code/refine_tissue.py | |
| parent | d3459851212333812f925da65de6def5be5a682d (diff) | |
Make correlation_per_group_fixed_number.R work, and update its upstream scripts (i.e., assign_tissue.py and refine_tissue.py).
Diffstat (limited to 'Code/refine_tissue.py')
| -rw-r--r-- | Code/refine_tissue.py | 5 |
1 files changed, 1 insertions, 4 deletions
diff --git a/Code/refine_tissue.py b/Code/refine_tissue.py index 8bc111c..182de1a 100644 --- a/Code/refine_tissue.py +++ b/Code/refine_tissue.py @@ -126,7 +126,7 @@ def map_tissue(s): 'vein':'leaf.vein', 'leaf vein':'leaf.vein', 'leaf lamina':'leaf.lamina', - 'leaf rosette':'leaf rosette', + 'leaf rosette':'leaf.rosette', 'rosette':'leaf.rosette', 'rosette leaf':'leaf.rosette', 'shoot':'shoot', @@ -286,9 +286,6 @@ for line in f: if lst[2] != 'part_unknown' and lst[2] != '.': s = lst[2].lower() s = map_tissue(remove_punctuation(s)) - # elif lst[2] == '.': - # s = lst[1] - # s = remove_parenthese(s) else: s = lst[1] if not ';' in s: |