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| author | Lan Hui <lanhui@zjnu.edu.cn> | 2025-04-16 16:05:50 +0800 |
|---|---|---|
| committer | Lan Hui <lanhui@zjnu.edu.cn> | 2025-04-16 16:05:50 +0800 |
| commit | 139d804f124b51806c4134961c989b79df228de0 (patch) | |
| tree | 9704fcd03be12bdfc18c6c4b377dcd840b6968f8 /Code/parse_ena_xml.py | |
| parent | d5e13c37b957e6ffa365e0ea905e28d8ebf132c2 (diff) | |
Diffstat (limited to 'Code/parse_ena_xml.py')
| -rw-r--r-- | Code/parse_ena_xml.py | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/Code/parse_ena_xml.py b/Code/parse_ena_xml.py index 1e5a514..30b68bf 100644 --- a/Code/parse_ena_xml.py +++ b/Code/parse_ena_xml.py @@ -25,6 +25,7 @@ # 01 Jun 2017, slcu, hui [added a column sample_id] # 19 Jun 2017, slcu, hui [added SraRunTable_Ath_Tax3702.txt in d_run2. Search d_run2 for how to get SraRunTable_Ath_Tax3702.txt.] # 10 Feb 2021, zjnu, hui [download latest run info files: information/ena_3702_read_run.xml, ena_3702_study.xml, ena_3702_sample.xml, information/ena_3702_read_experiment.xml;do not use SraRunTable_Ath_Tax3702.txt and d_run2 anymore.] +# 16 Apr 2025, zjnu, hui [adapt the code to latest run info files: ../Data/information/ena_read_run.xml, ena_study.xml, ena_sample.xml, and ena_read_experiment.xml] import os, json, re, operator import xml.etree.ElementTree import sys |