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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2021-02-18 13:35:33 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2021-02-18 13:35:33 +0800 |
| commit | 20de58ba55ecb36fb8eb1529f263b1ee5c9f2d08 (patch) | |
| tree | e6d077dab9fb38847195327e4c150b8749144e3f /Code/param4net.py | |
| parent | a56956a5db79d947030a74f7ea710fa6e973972c (diff) | |
make_target_tf.py and param4net.py: add an option EXISTING_TARGET_TF_PAIRS in parameter_for_net.txt to specify locations of existing Target-TF pairs.
Diffstat (limited to 'Code/param4net.py')
| -rw-r--r-- | Code/param4net.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/Code/param4net.py b/Code/param4net.py index a68e7e3..eccc540 100644 --- a/Code/param4net.py +++ b/Code/param4net.py @@ -11,7 +11,7 @@ def get_key_value(s): def make_global_param_dict(fname): f = open(fname) - d = {'GENE_LIST':'', 'HIGH_PRIORITY_GENE':'', 'BINDING_MATRIX':'', 'INPUT_MATRIX':'', 'EXPRESSION_MATRIX':'', 'BINDING_INFO':'', 'EXPRESSION_INFO':'', 'RESEARCH_KEYWORDS':'', 'USER_CONDITION_LIST':[], 'LOOK_FOR_POS_CORRELATION':'NO', 'LOOK_FOR_NEG_CORRELATION':'NO', 'MAKE_PLOT':'NO', 'TWO_WAY':'YES', 'THREE_WAY':'NO', 'TARGET_RANGE':'1000', 'FC':'2.0', 'PVALUE':'0.0001', 'QVALUE':'0.01', 'CHRINFO':{'1':30427671, '2':19698289, '3':23459830, '4':18585056, '5':26975502, 'Mt':366924, 'Pt':154478}, 'SELECT_POINTS_DIAGONAL_MAX_DIFF':0.25} # change + d = {'GENE_LIST':'', 'HIGH_PRIORITY_GENE':'', 'BINDING_MATRIX':'', 'INPUT_MATRIX':'', 'EXPRESSION_MATRIX':'', 'BINDING_INFO':'', 'EXPRESSION_INFO':'', 'RESEARCH_KEYWORDS':'', 'USER_CONDITION_LIST':[], 'LOOK_FOR_POS_CORRELATION':'NO', 'LOOK_FOR_NEG_CORRELATION':'NO', 'MAKE_PLOT':'NO', 'TWO_WAY':'YES', 'THREE_WAY':'NO', 'TARGET_RANGE':'1000', 'FC':'2.0', 'PVALUE':'0.0001', 'QVALUE':'0.01', 'CHRINFO':{'1':30427671, '2':19698289, '3':23459830, '4':18585056, '5':26975502, 'Mt':366924, 'Pt':154478}, 'SELECT_POINTS_DIAGONAL_MAX_DIFF':0.25, 'EXISTING_TARGET_TF_PAIRS':None} # change for line in f: line = line.strip() if line.startswith(GLB_PARAM_SYMBOL): |