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| author | Lan Hui <lanhui@zjnu.edu.cn> | 2025-10-29 18:00:27 +0800 |
|---|---|---|
| committer | Lan Hui <lanhui@zjnu.edu.cn> | 2025-10-29 18:00:27 +0800 |
| commit | 9a85ad752194846f26f2555d1f059f76ed31c43d (patch) | |
| tree | c1b4bb5408e782c48f9528230f79f0365be02426 /Code/configure.py | |
| parent | fafb342fe7e756c7a23b9d371565f089afdf18bd (diff) | |
Also look for a run's library strategy/source in EXPERIMENT_LIBRARY_INFO_FILE
Diffstat (limited to 'Code/configure.py')
| -rw-r--r-- | Code/configure.py | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/Code/configure.py b/Code/configure.py index be04994..219ba1d 100644 --- a/Code/configure.py +++ b/Code/configure.py @@ -43,6 +43,8 @@ MIN_RNA_SEQ_INCREASE = -999 # minimum RNA-seq experiments needed when updating p UPDATE_NETWORK_LOG_FILE = '../Data/log/update.network.log.txt' # network update log. We should check this file from time to time. NEW_OR_UPDATED_CHIP_FILE = '../Data/log/new.or.updated.chip.file.txt' +EXPERIMENT_INFO_DIR = '../Data/information/EXPERIMENT_SET' +EXPERIMENT_LIBRARY_INFO_FILE = '../Data/information/experiment_library_info.txt' # is a run an RNA-Seq? Get the info from the xml file path EXPERIMENT_SET/EXPERIMENT/DESIGN/LIBRARY_DESCRIPTOR RNA_SEQ_INFO_DATABASE = '../Data/information/rnaseq_info_database.txt' # same as RNA_SEQ_INFO_FILE RNA_SEQ_INFO_DATABASE_JSON = '../Data/information/rnaseq_info_database.json' |