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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2020-01-18 18:45:28 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2020-01-18 18:45:28 +0800 |
| commit | 5a70b3b498e64dc903b017d45be09a808cfb2b89 (patch) | |
| tree | 6da82bf54d1673bd8ff72cf1d8d83666467d2736 /Code/configure.py | |
| parent | 6db297407cad6a49ae977498a4ea4749dc98059f (diff) | |
download_and_map.py: write "no enough space" warning message to network log file
If there is no enough space left in the disk, download_and_map.py will refuse to download any data.
This can be quite mysterious for a maintainer.
So, write the reason to the network log file.
The reason is something like:
"[download_and_map.py] home directory does not have enough space (only 13 G available)."
-Hui
Diffstat (limited to 'Code/configure.py')
| -rw-r--r-- | Code/configure.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/Code/configure.py b/Code/configure.py index c740e98..ed6574d 100644 --- a/Code/configure.py +++ b/Code/configure.py @@ -6,7 +6,7 @@ SALMON_MAP_RESULT_DIR = '../Data/temp/salmon_map_result' KMER = 31
# From download_and_map.py
-DAILY_MAP_NUMBER = 5 # download this many samples each time. I have tested the values of 3, 4, 5, 8.
+DAILY_MAP_NUMBER = 4 # download this many samples each time. I have tested the values of 3, 4, 5, 8.
MIN_FASTQ_FILE_SIZE = 200000000 # in bytes, approximately 200MB
RNA_SEQ_INFO_FILE = '../Data/information/rnaseq_info_database.json' # some data downloaded from ENA are not RNA-seq (they are ChIP-seq). Use this file to tell whether the file is RNA-seq
DOWNLOADED_SRA_ID_LOG_FILE = '../Data/log/download_log.txt' # a list of downloaded SRA IDs
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