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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2024-08-07 18:40:49 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2024-08-07 18:40:49 +0800 |
| commit | e5593827fbc6c35e1df6b7ab1131b0717130219c (patch) | |
| tree | f5050e597dbd8c1b4e550e7575f409ce0563eba1 /Code/buildRmatrix.py | |
| parent | b442a3ddf7f0452e5dd0d8c042a5e155effea154 (diff) | |
Use TPM_FILE instead of TPM_TABLE
Diffstat (limited to 'Code/buildRmatrix.py')
| -rw-r--r-- | Code/buildRmatrix.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/Code/buildRmatrix.py b/Code/buildRmatrix.py index 363e0a3..1c90eb0 100644 --- a/Code/buildRmatrix.py +++ b/Code/buildRmatrix.py @@ -10,8 +10,9 @@ # Last modified 10 Oct 2020, hui, zjnu [note that if there are more than 1000 RNA-seq samples, this script requires at least 7GB memory to run.]
import os, sys, glob
+from configure import TPM_FILE
-TPM_TABLE = '../Data/history/expr/TPM.txt'
+TPM_TABLE = TPM_FILE
WARN_NA = False
####################################
@@ -239,4 +240,4 @@ global_param_dict = make_global_param_dict(param_file) data_dict = make_data_dict(param_file)
TPM_TABLE = os.path.abspath(TPM_TABLE)
save_TPM_table(get_gene_list(global_param_dict['GENE_LIST']), get_dict_list(data_dict), TPM_TABLE)
-#print('Done. Check %s.' % (TPM_TABLE))
+
|