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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2025-05-14 18:17:33 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2025-05-14 18:17:33 +0800 |
| commit | 85e2ea976114188fd87a5c142a57c3d49e4ca07b (patch) | |
| tree | 68e4b1660f14938bafb80fa41f51582e4b958ab5 /Code/buildRmatrix.py | |
| parent | 54697bed907f491a93df9d110c66226d4fe3a08a (diff) | |
TODO: speed things up
Diffstat (limited to 'Code/buildRmatrix.py')
| -rw-r--r-- | Code/buildRmatrix.py | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/Code/buildRmatrix.py b/Code/buildRmatrix.py index bb5fdfb..a4f4af7 100644 --- a/Code/buildRmatrix.py +++ b/Code/buildRmatrix.py @@ -7,6 +7,7 @@ # Last modified 5 Apr 2017, hui, slcu
# Last modified 25 Oct 2019, hui, zjnu [Comments; add a variable WARN_NA to turn on/off print NA warnings.]
# Last modified 10 Oct 2020, hui, zjnu [note that if there are more than 1000 RNA-seq samples, this script requires at least 7GB memory to run.]
+# TODO: this version is too slow. For example, making a TPM.txt with 5178 columns will take at least 12 hours. Should speed this up by using more memory (e.g., 12 GB), not a big deal nowadays.
import os, sys, glob
from configure import TPM_FILE
|