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| author | Hui Lan <lanhui@zjnu.edu.cn> | 2020-10-27 17:18:37 +0800 |
|---|---|---|
| committer | Hui Lan <lanhui@zjnu.edu.cn> | 2020-10-27 17:18:37 +0800 |
| commit | 7dceaa872716522ce6774d432855d877e32e4b9e (patch) | |
| tree | 53337a285118af65c6d2d8b05c43144103823f66 /Code/buildRmatrix.py | |
| parent | b0623e73c689e8ceb321cc374deb05df693c734f (diff) | |
buildRmatrix.py: use a string to store the max expression level from isoforms (revision).
Diffstat (limited to 'Code/buildRmatrix.py')
| -rw-r--r-- | Code/buildRmatrix.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/Code/buildRmatrix.py b/Code/buildRmatrix.py index 4557993..363e0a3 100644 --- a/Code/buildRmatrix.py +++ b/Code/buildRmatrix.py @@ -115,7 +115,10 @@ def save_TPM_table(gene_lst, dict_lst, fname): for g in gene_lst:
s = g
for d in dict_lst:
- v = get_max_expressed_isoform_save_space(g, d)
+ if g in d['isoform']:
+ v = d['isoform'][g]
+ else:
+ v = '-9'
total_count += 1
if v != '-9':
s += '\t' + v
|