/Code/

• ../
• MixReg.R
• TPM2JSON.py
• assign_tissue.py
• backup_files.py
• brain_number_genes_edges.py
• buildCmatrix.py
• buildRmatrix.py
• common_peak.py
• configure.py
• correlation_per_group.R
• correlation_per_group_fixed_number.R
• correlation_per_tissue.R
• count_AGI_in_cDNA.py
• count_word.py
• create_edges.py
• create_edges.r
• create_edges0.py
• create_edges0B.py
• create_edges3.py
• create_edges4.py
• create_edges4_k2.py
• create_edges4_k3.py
• create_edges_k2.R
• create_edges_mixtool.R
• crontab.txt
• degree_of_separation.py
• degree_of_separation2.py
• delete_not_used_fastq.py
• download_and_map.py
• download_ena_metadata.py
• draw_subnetwork.py
• draw_subnetwork2.py
• exclude_edges.py
• geneid2name.py
• get_TPM_by_salmon.py
• get_binding.py
• html_network.py
• json_test.py
• knn_classify.R
• local_network.py
• log.py
• make_graphviz_file3B.py
• make_graphviz_file3C.py
• make_parameter_bw.py
• make_parameter_dapseq2.py
• make_parameter_dapseq3.py
• make_parameter_rnaseq.py
• make_target_tf.py
• make_target_tf_agris.py
• make_upload_chip_parameter.py
• merge_edges.py
• overlap.py
• param4net.py
• parse_ena_xml.py
• parse_ena_xml_test.py
• prepare_gene_file.py
• process_3way_interaction.py
• process_3way_interaction2.py
• refine_tissue.py
• rnaseq_or_chipseq.py
• slice_TPM_to_JSON.R
• slice_TPM_to_JSON.py
• slice_binding_to_JSON.py
• test_network4.py
• text2json.py
• update_network.py
• update_network_by_force.py
• update_rnaseq_info_json.py
• utils.py
• validate_parameter_for_buildCmatrix.py
• wedge.R