From f6fb6ee751fee3d2cfa58232fbaffa8f2b6cdf9d Mon Sep 17 00:00:00 2001 From: Lan Hui Date: Tue, 13 May 2025 15:40:05 +0800 Subject: Deal with the case where the quant file is empty (0 KB) --- Code/make_parameter_rnaseq.py | 2 ++ 1 file changed, 2 insertions(+) (limited to 'Code') diff --git a/Code/make_parameter_rnaseq.py b/Code/make_parameter_rnaseq.py index f9c7d26..e7b971e 100644 --- a/Code/make_parameter_rnaseq.py +++ b/Code/make_parameter_rnaseq.py @@ -84,6 +84,8 @@ def non_zero_ratio(fname): if not tpm == '0' and not 'nan' in tpm: non_zero_count += 1 total_count += 1 + if total_count < 1: + return 0.0 return 1.0 * non_zero_count / total_count def get_rna_word_count(s): -- cgit v1.2.1