From e5593827fbc6c35e1df6b7ab1131b0717130219c Mon Sep 17 00:00:00 2001
From: Hui Lan <lanhui@zjnu.edu.cn>
Date: Wed, 7 Aug 2024 18:40:49 +0800
Subject: Use TPM_FILE instead of TPM_TABLE

---
 Code/slice_TPM_to_JSON.R | 19 -------------------
 1 file changed, 19 deletions(-)
 delete mode 100644 Code/slice_TPM_to_JSON.R

(limited to 'Code/slice_TPM_to_JSON.R')

diff --git a/Code/slice_TPM_to_JSON.R b/Code/slice_TPM_to_JSON.R
deleted file mode 100644
index fb7a39d..0000000
--- a/Code/slice_TPM_to_JSON.R
+++ /dev/null
@@ -1,19 +0,0 @@
-
-library(rjson)
-dir.name <- '../Data/history/expr/json'
-tpm.file <- '../Data/history/expr/TPM.txt'
-take.log <- 'YES'
-X <- read.table(tpm.file, header=T, check.names=FALSE, sep="\t")
-gene.id <- as.vector(X[,1])
-X[,1] <- NULL # remove first column
-if (take.log == 'YES') {
-    X <- log(X+1)
-}
-if (!dir.exists(dir.name)) {
-    dir.create(dir.name)
-}
-for (i in 1:dim(X)[1]) {
-    y <- toJSON(X[i,])
-    file.name = paste(dir.name, paste(gene.id[i], 'json', sep='.'), sep='/')
-    cat(y, file=file.name)
-}
-- 
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