From afd2850262ec90208a439b66a1876041c6d9c7d8 Mon Sep 17 00:00:00 2001 From: Hui Lan Date: Wed, 30 Apr 2025 19:27:45 +0800 Subject: Which fastq file is under mapping? --- Code/get_TPM_by_salmon.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) (limited to 'Code/get_TPM_by_salmon.py') diff --git a/Code/get_TPM_by_salmon.py b/Code/get_TPM_by_salmon.py index a4ce3ff..461c2c8 100644 --- a/Code/get_TPM_by_salmon.py +++ b/Code/get_TPM_by_salmon.py @@ -14,7 +14,8 @@ # Last modified by Hui 10 Sep 2019 import sys, os, glob, shutil -from configure import SALMON, SALMON_INDEX, TRANSCRIPTOME, SALMON_MAP_RESULT_DIR, KMER +from log import write_log_file +from configure import SALMON, SALMON_INDEX, TRANSCRIPTOME, SALMON_MAP_RESULT_DIR, KMER, UPDATE_NETWORK_LOG_FILE #TRANSCRIPTOME = '/home/hui/tair10/AtRTD2_19April2016.fa' #TRANSCRIPTOME = '../Data/information/ath_genes_index_v2.fa' @@ -140,3 +141,4 @@ for k in src_id: src_dir = src_id[k][0] file_id = k get_TPM(src_dir, file_id, SALMON_INDEX, SALMON_MAP_RESULT_DIR) + write_log_file('[get_TPM_by_salmon.py] Mapped %s' % k, UPDATE_NETWORK_LOG_FILE) -- cgit v1.2.1