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AgeCommit message (Collapse)Author
35 hoursRegular maintenanceHEADmasterLan Hui
2 daysFix curr_time not defined errorLan Hui
2 daysAlso look for a run's library strategy/source in EXPERIMENT_LIBRARY_INFO_FILELan Hui
3 daysMap experiment ID to library strategy and library sourceLan Hui
5 daysShow library infoLan Hui
5 daysRegular maintenanceLan Hui
7 daysInformation on how to tell whether a run is RNA-seq or notLan Hui
8 daysBatch get experiment infoLan Hui
9 daysHandle the case where given an experiment ID, no corresponding ↵Lan Hui
LIBRARY_STRATEGY or LIBRARY_SOURCE could be found.
11 daysMaintenanceLan Hui
2025-10-15Should be , notLan Hui
2025-10-14If the update date of mapped RNA-seq data is newer than that of the json ↵Lan Hui
files in hypogen/json/, then re-make these json files.
2025-10-05Copy updated gene expression json files to hypogen's json folderLan Hui
2025-10-05Write a bash script for updating json files in Data/history/expr/json/Lan Hui
2025-10-01get_mapped_data.py: do not disconnect from the Redis ServerHui Lan
2025-08-27Fix 'function download_log_file not found' errorHui Lan
2025-08-26Remove the publish quant data stuff from download_and_map.py. Publish using ↵Hui Lan
publish_mapped_data.py.
2025-08-26Use the correct function write log fileHui Lan
2025-08-19Running the publisher as a seperate script seems solved the problem of not ↵Hui Lan
being able to receive messages.
2025-08-11Why the message cannot be received?Hui Lan
2025-08-06[download_and_map.py] Anything wrong in redis public? Why I cannot see the ↵Hui Lan
published data on my subscriber side (Raspberry Pi 5)
2025-08-06Test whether REDIS Channel can cache not-consumed dataHui Lan
2025-07-31Fix unmatched ')' errorLan Hui
2025-07-31import path to log fileLan Hui
2025-07-31Test redis tomorrow morningLan Hui
2025-07-31Test whether redis worksLan Hui
2025-07-30Use redis to transfer newly mapped data [not tested]Lan Hui
2025-07-21Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-07-21Make a file for recording bugs.Hui Lan
2025-06-22Less downloading during the short semesterHui Lan
2025-06-10Remove not real tissue type: 'not collected'Lan Hui
2025-06-04Make cleaner tissue namesLan Hui
2025-06-03Get more complete tissue information from ena_sample.xmlLan Hui
2025-05-21TAG 'development stage' may also contain tissue infoLan Hui
2025-05-20Extract a function to handle tissue type infoLan Hui
2025-05-20Derive better tissue namesLan Hui
2025-05-15Show NA as string 'NA', do not silently omit itLan Hui
2025-05-14Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-14TODO: speed things upHui Lan
2025-05-14Awk command to count the number of columnsLan Hui
2025-05-13Fix SyntaxWarning errorLan Hui
2025-05-13Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-13Deal with the case where the quant file is empty (0 KB)Lan Hui
2025-05-13Merge branch 'master' of 118.25.96.118:~/BRAINCLHui Lan
2025-05-13Correct typoLan Hui
2025-05-08Work fewer hoursHui Lan
2025-05-07The variable new_dir_name is unnecessary, so remove itHui Lan
2025-05-06Turn on wget's quiet mode, so that it won't show info about the downloading ↵Hui Lan
process, therefore reducing the amount of data written to /var/lanhui/mail
2025-05-03download_and_map.py: download and map more if there is still time, even ↵Lan Hui
after having processed DAILY_MAP_NUM
2025-04-30Which fastq file is under mapping?Hui Lan
generated by cgit v1.2.1 (git 2.18.0) at 2025-10-31 18:10:31 +0000