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includes all info.
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rnaseq_info_database.json file.
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quant.sf.
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isoforms (revision).
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script could run out of memory space (7GB) when there are more than 1000 RNA-seq samples.
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AT3G09600_AT1G49720_0.html correct (revision 2).
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AT3G09600_AT1G49720_0.html correct (revision).
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/var/www/brain/brain).
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AT3G09600_AT1G49720_0.html correct.
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executed as a cron job.
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improvement, writting one million rows to a sqlite db table is really fast.
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of commit for each insertion.
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will stop working. Make it work when the log file contains blank lines. These blank lines usually appear in the end of the log file.
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downloading and mapping proceed.
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number of arguments.
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json.dumps could not fix that.
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network is updated
The Apache web server will be restarted daily to free memory.
sudo service apache2 restart
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running update_network_by_force.py
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Compute an edge's strength on the fly instead of saving everything and then computing the net strength.
The new function make_new_edge2 will replace make_new_edge.
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When merging many big edge files, the computer may run out of memory.
Save the edge files that have been considered thus far and figure out where merging stopped.
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