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Age	Commit message (Collapse)	Author
2024-08-10	[update_network.py] Do not generation json files for gene expression if not ↵	Hui Lan
	do webapp
2024-08-09	[update_network.py] Simplify code	Hui Lan

2024-08-07	Fix error occurred while running update_network.py	Hui Lan

2024-08-07	[update_network.py] Rename FILE_TIMESTAMP to TIMESTAMP_FILE	Hui Lan

2024-08-07	Review update_network.py	Hui Lan

2024-08-07	Put the definition of make_paths() in utils.py because multiple places use it	Hui Lan

2024-08-06	update_network.py: delete the 'merge edge' stuff because this is the job of ↵	Hui Lan
	update_network_by_force.py
2024-08-05	Update write_log_file() so that it put the most recent message on the top; ↵	Hui Lan
	remove duplicate write_log_file()
2022-11-20	update_network.py: no longer need to redirect to file	Hui Lan

2022-10-09	Shorten config variable name, remove 'PARAMETER_FOR_'	Hui Lan

2021-02-09	update_network.py: code review.	Hui Lan

2021-02-06	Move edge files in edge_pool to /disk1/edge_pool to save space in the workspace.	Hui Lan

2020-10-21	update_network.py: make TPM.txt.	Hui Lan

2020-02-06	backup_files.py: fix misspelling	Hui Lan

2020-01-21	merge_edges.py: write all edge information to an SQLite database file called ↵	Hui Lan
	edges.sqlite When I saved a static html page for each edge (e.g., http://118.25.96.118/static/edges/AT1G20910_AT1G30100_0.html), it took 5GB disk space for saving 1 million html pages. Not very disk space efficient. An alternative is to save all edge information in a database table (i.e., edge), and query this database table for a particular edge. The database file edges.sqlite takes less than 200MB for 1 million edges, requiring 10 times smaller space than the static approach. The reason is that we do not have a lot of HTML tags in the database. Quite happy about that, though it seems that filling a database is a bit slower (2 hours??? for 1 million rows). Also updated two files that were affected: update_network.py and update_network_by_force.py. Now instead of copying 1 million static html page to the Webapp, I just need to copy edges.sqlite to static/edges/. Faster. In the Webapp, I updated start_webapp.py and added a file templates/edge.html for handling dynamic page generation. -Hui
2019-12-07	create backup_files.py for backing up files	Hui Lan
	Define a function copy_and_backup_file(src_file, dest_dir) to do backup and compression work. The function copy_and_backup_file is used in update_network_by_force.py. -Hui
2019-12-04	brain: add python and R code to local repository.	Hui Lan