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Diffstat (limited to 'Code/merge_edges.py')
-rw-r--r-- | Code/merge_edges.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/Code/merge_edges.py b/Code/merge_edges.py index 6bbd2f0..872faa9 100644 --- a/Code/merge_edges.py +++ b/Code/merge_edges.py @@ -23,6 +23,7 @@ import os, operator, sys, math, datetime, glob from log import write_log_file from configure import EDGE_POOL_DIR, MERGED_EDGE_FILE, SQLITE_EDGE_FILE, UPDATE_NETWORK_LOG_FILE +from utils import make_paths import sqlite3 def get_number_of_RNAseq_ids(s): @@ -134,6 +135,9 @@ def make_new_edge(d): ##main + +make_paths(EDGE_POOL_DIR) + write_log_file('[merge_edges.py] Go through all edge files in the edge pool %s.' % (EDGE_POOL_DIR) , UPDATE_NETWORK_LOG_FILE) d = {} # d will contain all edges computed so far, where the key is TargetGeneID_TFGeneID, and the value is a list of tuples. Each tuple is a historical edge. file_count = 0 |