diff options
Diffstat (limited to 'Code/create_edges0.py')
| -rw-r--r-- | Code/create_edges0.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/Code/create_edges0.py b/Code/create_edges0.py index 75cb1e1..f124370 100644 --- a/Code/create_edges0.py +++ b/Code/create_edges0.py @@ -4,7 +4,7 @@ #
# Quickly create edges using all samples in TPM.txt. TF and targets
# are from target_tf.txt. Results will be written to
-# ../Data/history/edge_pool/edges.txt.simple.correlation.all.conditions.date
+# EDGE_POOL_DIR/edges.txt.simple.correlation.all.conditions.date
# target_tf.txt is produced by make_target_tf.py.
#
#
@@ -15,13 +15,14 @@ import sys, os, operator, itertools from datetime import datetime
from geneid2name import make_gene_name_AGI_map_dict, get_gene_name
from param4net import make_global_param_dict
+from configure import EDGE_POOL_DIR
TARGET_FILE = '../Data/temp/all_targets.txt'
TF_FILE = '../Data/temp/all_tfs.txt'
RESULT_FILE = '../Data/temp/corr_all.txt'
R_SCRIPT_FILE = '../Data/temp/compute_simple_correlation.r'
-HISTORY_DIR = '../Data/history/edge_pool' # edges.txt.* files are here
+HISTORY_DIR = EDGE_POOL_DIR # edges.txt.* files are here
def get_value(s, delimit):
|