diff options
Diffstat (limited to 'Code/configure.py')
| -rw-r--r-- | Code/configure.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/Code/configure.py b/Code/configure.py index 2f0fbd9..148bcd5 100644 --- a/Code/configure.py +++ b/Code/configure.py @@ -6,7 +6,7 @@ SALMON_MAP_RESULT_DIR = '../Data/temp/salmon_map_result' KMER = 31 # From download_and_map.py -DAILY_MAP_NUMBER = 4 # download this many samples each time. I have tested the values of 3, 4, 5, 8. +DAILY_MAP_NUMBER = 10 # download this many samples each time. I have tested the values of 3, 4, 5, 8. MIN_FASTQ_FILE_SIZE = 200000000 # in bytes, approximately 200MB RNA_SEQ_INFO_FILE = '../Data/information/rnaseq_info_database.json' # some data downloaded from ENA are not RNA-seq (they are ChIP-seq). Use this file to tell whether the file is RNA-seq DOWNLOADED_SRA_ID_LOG_FILE = '../Data/log/download_log.txt' # a list of downloaded SRA IDs @@ -54,3 +54,4 @@ SQLITE_EDGE_FILE = '../Data/temp/edges.sqlite' DIFF_EDGE_FILE = '../Data/temp/edges-diff.txt' # the difference between two edge files from yesterday and from today TARGET_TF_FILE = '../Data/information/target_tf.txt' +>>>>>>> 837a291e6a1816920c7116410dd1e0df9fd3eaf7 |